PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA04G28090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 433aa    MW: 48669.4 Da    PI: 8.3688
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA04G28090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.65.5e-19299394395
                      EE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      k+lt+sdv++ gr+v+pk+ ae+h   + ++e+++l++ d +   +W++k+++  ++ks++yvl+  + +Fvk++gL++gD+++++ + +++++
  ONIVA04G28090.1 299 KELTNSDVGNIGRIVMPKRDAEAHlpALHQREGVMLKMDDfKLETTWNFKYRFwpNNKSRMYVLE-STGGFVKQHGLQTGDIFIIYKS-SESEK 390
                      89************************888999********7778*******9989999999**99.9*******************43.37777 PP

                      .EEE CS
               B3  92 lvvk 95 
                      lvv+
  ONIVA04G28090.1 391 LVVR 394
                      7776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-25296396IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-22296394No hitNo description
SuperFamilySSF1019361.1E-18296393IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.4E-10297399IPR003340B3 DNA binding domain
PROSITE profilePS508639.079297399IPR003340B3 DNA binding domain
PfamPF023623.2E-15299394IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MADTRGSTSS GGGDDRGREG HDDFTGGGQY NKYHRILEAV PSPLVRRENV VHHQYPTGLI  60
HHPSSTMPVA PCSYVPRYTM VPTSAMLPLQ HHHRQLQISQ ENFQDRVPSN NVAAPHLPSN  120
FQDLRPMCNG PPFMSYGQTA SNRNVLYQNL TPYSFNAWAS NNMPRNPVYT SYHPTAIEDP  180
HATPFHINNH DTDQGFFTVS TSFRVDQSFV HAPSPFPPVS SSSRSFSSAQ ISNGPTDAKK  240
AKKSDIKDQP IVLRRSDTES EKNDELDQTP ASEPSSMSHN SANSTIRFNC REYRVILRKE  300
LTNSDVGNIG RIVMPKRDAE AHLPALHQRE GVMLKMDDFK LETTWNFKYR FWPNNKSRMY  360
VLESTGGFVK QHGLQTGDIF IIYKSSESEK LVVRGEKAIK PNVIMPIVDC SCKNDLNNSE  420
ECGFAISLLT KKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0728740.0AK072874.1 Oryza sativa Japonica Group cDNA clone:J023145I07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635183.10.0PREDICTED: B3 domain-containing protein Os04g0676600
SwissprotQ7XKC50.0IDEFH_ORYSJ; B3 domain-containing protein Os04g0676600
TrEMBLA0A0E0H7G60.0A0A0E0H7G6_ORYNI; Uncharacterized protein
STRINGBGIOSGA014094-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118172835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.13e-36B3 family protein